pt. 1. Background basics -- The nucleic acid world -- Protein structure -- Dealing with databases -- pt. 2. Sequence alignments -- Producing and analyzing sequence alignments -- Pairwise sequence alignment and database searching -- Patterns, profiles, and multiple alignments -- pt. 3. Evolutionary processes -- Recovering evolutionary history -- Building phylogenetic trees -- pt. 4. Genome characteristics -- Revealing genome features -- Gene detection and genome annotation -- pt. 5. Secondary structures -- Obtaining secondary structure from sequence -- Predicting secondary structures -- pt. 6. Tertiary structures -- Modeling protein structure -- Analyzing structure-function relationships -- pt. 7. Cells and organisms -- Proteome and gene expression analysis -- Clustering methods and statistics -- Systems biology.

Includes bibliographical references and index.

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